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(1) Sequence comparison (2) Nucleotide Diversity
Blast Clustal Jalview SNPs-Graphic PDA Server

Blast    (Ver. 2.2.2)
(Search matches between your query nucleotide/protein sequences and the non-redundant sequences from Drosophila stored in the DPDB database or the Drosophila melanogaster genome contigs)

Blast Help
 
GENERAL SETTINGS CHOOSE A PROGRAM SET SUBSEQUENCE
From: To:
 
  SELECT ONE OR MORE DATABASES (Ctrl)
STATISTICS OF THE ASSEMBLIES:

See Info_assemblies NEW Freeze 1 Assemblies for many species!

 
 
OUTPUT OPTIONS PRODUCE HTML OUTPUT NUMBER OF ON-LINE DESCRIPTIONS (V) NUMBER OF ALIGNMENTS TO SHOW (B) ALIGNMENT VIEWING OPTIONS
 
ADVANCED OPTIONS EXPECTATION VALUE (E) FILTER LOWER CASE FILTERING QUERY STRANDS
(blastn, blastx, tblastx)

Masking
Window       
Locut/Cutoff
Hicut/Linker 
   
MATRIX  
(not blastn)		 GAP COSTS WORD SIZE
 
PENALTY FOR MISMATCH  
(blastn)		 REWARD FOR A MATCH  
(blastn)		 EFFECTIVE LENGTH OF THE DATABASE  
(use 0 for real size)		 EFFECTIVE LENGTH OF THE SEARCH SPACE  
(use 0 for real size)
 
DROP-OFF (X) FOR BLAST EXTENSIONS (in bits) DROP-OFF (X) FOR FINAL GAPPED ALIGNMENT (in bits) DROP-OFF (X) FOR GAPPED ALIGNMENT (in bits) (not blastn) GI's RESTRICTION

Insert GI numbers:
 

or Upload a File:

 

Enter or Paste a set of Sequences in any supported format :
Upload a file:             

 

DGM UAB