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(1) Sequence comparison (2) Nucleotide Diversity
Blast Clustal Jalview SNPs-Graphic PDA Server

ClustalW    (Ver. 1.83)
(Default parameters have been optimized for polymorphism analyses)

ClustalW Help

GENERAL SETTINGS ALIGNMENT TITLE ALIGNMENT TYPE OUTPUT
FORMAT
OUTPUT
ORDER
           
FAST PAIRWISE ALIGNMENT KTUP
(WORD SIZE)
WINDOW LENGTH SCORE TYPE TOPDIAG PAIRGAP
           
MULTIPLE ALIGNMENT MATRIX GAP OPEN END GAPS GAP EXTENSION GAP DISTANCES
           
PHYLOGENETIC
TREE
*
(*Introduce an alignment in one of the accepted formats: NBRF/PIR, EMBL/SwissProt, Pearson/Fasta, GDE, Clustal, GCG/MSF, RSF) TREE TYPE CORRECT DIST. IGNORE GAPS
 

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